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  "Title": "Analysis of Multiplex Cytometric Bead Assays",
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  "Description": "Reproducible and automated analysis of multiplex bead\nassays such as CBA (Morgan et al. 2004; <doi:\n10.1016/j.clim.2003.11.017>), LEGENDplex (Yu et al. 2015; <doi:\n10.1084/jem.20142318>), and MACSPlex (Miltenyi Biotec 2014;\nApplication note: Data acquisition and analysis without the\nMACSQuant analyzer;\n<https://www.miltenyibiotec.com/upload/assets/IM0021608.PDF>).\nThe package provides functions for streamlined reading of fcs\nfiles, and identification of bead clusters and analyte\nexpression. The package eases the calculation of standard\ncurves and the subsequent calculation of the analyte\nconcentration.",
  "License": "MIT + file LICENSE",
  "URL": "https://gitlab.com/ustervbo/beadplexr",
  "BugReports": "https://gitlab.com/ustervbo/beadplexr/-/issues",
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  "Date/Publication": "2023-06-19 06:38:29 UTC",
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    "facs_scatter",
    "fit_standard_curve",
    "identify_analyte",
    "identify_cba_analyte",
    "identify_legendplex_analyte",
    "identify_macsplex_analyte",
    "load_panel",
    "plot_estimate",
    "plot_std_curve",
    "plot_target_est_conc",
    "read_fcs",
    "trim_population",
    "turning_point"
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      "object": "simplex",
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      ],
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      "table": false,
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      "title": "Cast list of analytes to 'data.frame'",
      "topics": [
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      ]
    },
    {
      "page": "calc_analyte_mfi",
      "title": "Calculate the analyte intensity",
      "topics": [
        "calc_analyte_mfi"
      ]
    },
    {
      "page": "calc_std_conc",
      "title": "Calculate standard concentration",
      "topics": [
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      ]
    },
    {
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      "title": "Calculate concentration.",
      "topics": [
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      ]
    },
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      "title": "Clustering with trimming",
      "topics": [
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        "bp_dbscan",
        "bp_density_cut",
        "bp_kmeans",
        "bp_mclust",
        "cluster_events"
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        "facs_density2d",
        "facs_hexbin",
        "facs_plot",
        "facs_scatter"
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      "title": "Identify analyte",
      "topics": [
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    },
    {
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      "title": "Identify multiplex assay analytes",
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        "identify_cba_analyte",
        "identify_legendplex_analyte",
        "identify_macsplex_analyte"
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        "plot_target_est_conc"
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